Congrats on the camper!
How bad is the rot in the cabover? If it's just darkened wood but it still feels solid (that's the case on mine), I would just let it dry out really well, possibly disinfect it and keep an eye on it.
For solar battery systems, I find it much more cost-effective to piece one together as opposed to using a "kit". The size of the panel and battery depend on your typical electrical load in the camper and whether or not the camper is also being charged by the truck.
My truck camper has minimal appliances (no furnace, no fridge, no TV, etc) so even without a truck connection to charge while driving, the 10W panel, single, Walmart RV battery and an inexpensive charge controller (~$20) keeps up with the demand of the lighting, water pump and accessories very nicely and maintains the battery well while the camper is parked. If you have a furnace, depending on how often it's used, a 30W panel may be able to keep up. If you use an electric compressor fridge like an Engle, etc, most have found that a 50W panel can usually keep up. If you have a flat-screen, gaming system, home-theater, etc, you may need 100W of solar or more and at least a pair of deep cycle batteries connected in parallel. It all depends on your typical electrical load.
I've found the least expensive way to source the panel(s) and charge controller are the products directly from China that are listed on Ebay. Just do a Ebay search for "20W solar", "50W solar", etc. Do be sure to use a charge controller between the panel and battery. Panels have an open circuit voltage of about 20V and if left connected for long without loads or monitoring, it can damage the battery due to an over-voltage condition. The charge controllers are fully automatic and easy to wire. They do a great job of keeping the battery in a healthy voltage range and prevent sulfation that affects RV batteries that are not solar-charged or otherwise charge-maintained. My 10W panel and charge controller totaled about $50 and I salvaged a free, used battery. I believe the solar charger has gradually desulfated the battery over time--it has much greater capacity now than it did a few years ago.