Good info!
The thing is, perhaps I didn't stat it clearly, is that I've got a new to me used NP231 with a SYE already installed. What I'm wondering is, what can I do on the bench to assure that it will function properly when installed?
Ah, I just don't have enough coffee in me this morning

.
Besides making sure it will shift into each of the gears/ranges and turning smooth there's not much you can do until you get it into the vehicle (at least the skids on an XJ are that hard to deal with

). Unless the chain is brand new, there will be some slop in it, and shifting tends to take a little rotation of the input shaft to get it into gear.
If you're really worried, grab a tube of rtv and tear it apart to inspect it. You'll likely need an impact to get the yokes off on the bench though.
231s will take a beating though. The only one I've dealt with that had a chain problem was our comp YJ. Running 36" iroks and beating on it for 2-3 seasons finally broke a few links in the chain. It was still in one piece, but was getting a little noisy. It also destroyed a few of the bearings at one point, you could tell that by some side to side movement of the output shaft. I really wasn't ably to diagnose that one from the outside though. It needed a good teardown to find everything that had been beaten up on it.
Jason