It is hard to recommend cycling a battery to 50% when not needed, however I think this, and a proper recharge will keep that Aux battery in top condition for the next outing.
NOw the issue is with the Chargers. Odyssey has a list of approved chargers and without exception they meet this 40% rate and at least come close to the 14.7v Acceptance.
http://www.odysseybattery.com/documents/ODYSSEYapproved12VchargersMay2013_000.pdf
Odyssey sells their own charger, made by Schumacher to meet their charging algorithm, but they are expensive, and should only be used on one battery at a time. If your NL relay will combine both batteries when it sees charging voltages on either, then it should be disabled so the full amperage goes only to one battery.
http://www.amazon.com/Odyssey-Batte...84441&sr=1-1&keywords=Odyssey+battery+charger
The Odyssey engineer I spoke with mentioned there was another way to squeeze every last amp into the battery, and that was with high voltages(16+), at very low amperages. this of course dictates that nothing be connected to the battery but the charger at the time of charging as those voltages are in the danger territory for many 12v devices.
The 40% rate is what kept me from getting an Odyssey as my solar can barely make 20% on the best day mid summer.
I did Buy a NorthstarAGM battery, which had a longer list of approved chargers. I suspect NS and ODYssey are very similar internally though, as they make many of the same claims. I cycled it 60 to 70% nightly for a week and allowed it solar only recharging, and it still held a resting high OCV and seemed to hold voltage the same each night under similar loading, but when I transferred it back to engine starting duties, i could tell that extra "oomph", that near violence at spinning the starter motor so quickly had diminished somewhat. So I cycled it again to about 50% and then fed it 25 amps from my Schumacher and that violent starting Oomph was back.
Also when this battery was spanking new, it had an open circuit voltage of only 12.84v. NS claims it should be 13 or over. I could not force any more amps into the battery at this stage at voltages under 14.8, and was in a mind to return the battery.
Remembering the Odyssey specs I decided to cycle it to 50% and give it 40% recharge rate. It really seemed to wake the battery up. That first engine cranking after that 50% cycle and 40% recharge rate was very surprising, and after that, fully charged resting voltages have been no lower than 13.06v.
So While it is hard to recommend cycling a battery unnecessarily, I have found that doing so, and recharging at a high rate seems like a slap across the face of a lazy battery.
I am giving my NorthStar battery 25 Schumacher amps as I type this, as I turned a few switches and took it down to 12.1v overnight. I had not given it any Schumacher amps for a while and only have been cycling it very shallowly, but it seemed to have lost a bit of that starter violence in just sitting around, or just doing engine starting duties.
I've also noticed my Flooded group 31 battery enjoys being recharged at a higher rate than my solar can do, after a 50% cycle. It really holds a higher voltage during the next discharge cycle, and measuring Specific gravity confirms this too. And this battery manufacturer recommends only a 10% rate which is 13 amps, I was feeding it 25 amps in bulk mode.
The Low and slow mindset of battery charging should be locked up with the old wives and their tales, in my opinion.