Sorry I dont have ability to post a drawing, Visually my caution would make perfect sense.
Anyway,
My caution maybe a moot point, but its based on a couple unknowns of your specific PV controller and 36V powersupply. You need to know what type they are.
Many PV controllers are so called "positive ground". That means all its input & output positive terminals are internally common to each other. Its negative side does the voltage regulation and if used, load control.
Using this type on a vehicle is normally ok as long as its PV input does not have a negative grounded conductor. (As well its PV load terminals do not supply any negative grounded loads.)
If your proposed 36V powersupply (I assume powered from your car ?) has its output negative common with its input negative/vehicle negative, connecting that to PV controller input effectively bypasses voltage regulation of the PV controller to apply 36V direct to battery.