Have you seen any corrosion on the aluminum where your stainless bolts contact it?
How long has it been together like that?
Did you add the silicon to the bolts yourself?
Sorry for all the questions but I am about to put aluminum skin on my steel framed cabover truck bed camper and haven't found a solution for the bolts. In between the steel bracing and the aluminum I will use VHB tape.
I recently put a 1/4" aluminum plate on the bed my little steel-framed utility trailer. I tend to suffer from analysis paralysis and over thought galvanic corrosion. My cheap solution was to cover the steel really well with a Rustoleum primer/paint, then put a PVC/foam seal (same used between campers and truck beds-cheap), use zinc-coated bolts and nylock nuts, nylon washers between the aluminum and foam (that was a pain) and finally dielectric grease on the threads and head of the bolts.
Overall, it wasn't difficult and, including cutting the aluminum to fit, took about 2 hours.
Time will tell, but my goal was to isolate the aluminum from any steel. I had a wood floor before, and I'm hoping never to have to worry about it again.