I get a pretty hard clunk only when it downshifts to 1st when throttling out of a slow turn or corner. If I ease into the gas, the downshift has no clunk. I've looked at all the drivetrain mounts and universals and everything is tight.
I've got about 250k on mine, similar noises.
An overlooked thing to check are the bushings that are between the cross member the torsion keys are inside of and the frame. If all other bushings check out, then it might be the trans. Pull the pan and check for metal.
Clunking at shift in mine is (I think) from worn sprag clutches. Yours might be something else. If you downshift into 3rd or 2nd and lift off the throttle at a higher speed for the gear you will see the rpms drop all the way down to idle instead of decreasing with speed, then clunk when you get back on the throttle and rpms go back up if it is the sprags. I figure the easiest thing to do is run it until I lose a gear then replace the trans.
I also get the hard clunk that when turning and getting on it in first. I suspect either engine mount or sway bar mount or link bushings. Next time it is in the shop I'll try to diagnose and will try to remember to get back here.
I'm also starting to suspect it might be transfer case related, based on getting some binding at low speed high steering angle binding.
"Lifter" noise for me is from a broken exhaust manifold bolt. If the noise goes away when hot, it is likely exhaust related. If it stays the same or gets louder when hot, might be lifters. If it is an exhaust leak you might get a CEL showing lean condition on bank 1 or 2 with a cat efficiency code for same bank.
For reference, I have replaced LCA bushings and ball joints, UCA's including ball joints and bushings, inner and outer tie rods, shocks, rear springs, u-bolts, hanger and shackle bushings, and rear shocks.
For the wind noise check all your door seals against a newer van (2500 and 3500 are the same and easier to find then a 1500) and see if gaps between door and body are even and consistent.
I HATE drive train noise, and generally go overboard replacing everything I can think of to fix them, but with this van I am starting to learn to live with it and accept that it is part of driving a high mileage van. I have put 80k miles on this van through a lot of rough roads, and despite the noises it has yet to let me down. I drove 800 miles last week, a good portion of that on roads that I was walking lines and wishing for 4low.
Next on my list (after the manifold bolt) is re-gearing with complete front and rear diff rebuild and universal joints front and back. I have slim hope that maybe that might take care of some of the clunking I hear, but probably just wishful thinking.