My old TJ had a soft top and I always wanted a hardtop for the winter. It had full doors and I got an extra set of half doors off Craig's List for the summer.
I ordered my JK with a hard top and full doors. I got an unopened soft top off Craig's List and Rugged Ridge half doors for summer and trails.
The winter combo keeps it looking good, dry, warm, and quiet. I can still have an open top when wanted, but storing the hardtop panels are a pain sometimes with the 2 door.
The summer combo has much less chance of trail damage and it's so much easier to flip the top and/or zip out the windows.