Do not know about the 2001, but, my 1999 7.3 PSD ran 1 alternator at a time. The PCU "autioneered" the alternators, also, the alternators did not charge until some amount of time after starting. this had to do with glow plug survival and system voltage.
As far as turning one off, the small gauge wire to each alternator is the field wire. I have unhooked the field wire, output stopped, and the alternator was not damaged.
HTH