no need to isolate the charger with a switch, they maintain your batteries when not in use so you can leave the charger hooked up continuously with shore/generator power.. A good charger should be safe to keep connected to a lead battery indefinitely.
charger needa be as close to battery as is reasonable, so it knows the actual voltage and temperature of battery.
I have a honda 2200 and 45A charger on my rig, works great even at full amps the genny is basically idling and quiet. Got a 100' 12ga extension cord from harbor freight and I can get genny far enough away its virtually silent while batteries are getting refilled.. solar is next and I'm expecting my generator use to go down dramatically.. but its not going anywhere, batteries are too expensive to abuse and solar in a forrest is nowhere near as dependable as a honda is.