This court case was in the Pacific NW, where salmon are an important species, historically, ecologically, and economically. The optimal steam conditions for their spawning are well known. That includes relatively clean gravels. Too much silt is bad, but so is bare bedrock. The surrounding hillsides are typically steep, but well vegetated. Heavy silting after rain storms is not common, though there are occasional landslides.
Urban development, logging, and roads have all been shown to produce changes in run off and in its sediment load. These changes not only affect the salmon, but also communities downstream, making them more vulnerable to flooding.
As a historical note, one of the first cases of environmental law arose in California over sedimentation. Specifically farmers in the Sacramento area objected to the vast amounts of sediment that washed on to their land as a result of hydraulic mining in the mountains. This dates back to the second half of the 1800s.
The Colorado is not a salmon stream. Sediment plays a different role. Dams have produced more changes than roads, since they block much of the sediment. They experimented with some high volume discharges from Glen Canyon trying see if they could restore some of the sandbars in the Grand Canyon portion.