The only other things that I have heard of are an exhaust leak directly on to the block, floss was tied to a stick and moved between block and header where a crack was found, that was on a HO. I know on the 2000 the manifolds are cast and connect via the precats so this may be a non issue.
Timing on the 00 are set by removing the cam position sensor off the oil pump drive shaft, rotate crank to TDC, verify compression on cyl 1 and 0 deg on vibration damper. A tooth pick should slide into a hole from the oil pump drive to the pulse ring. If it dose not align pull the pump drive, insert tooth pick and rotate drive to mate with slot in oil pump. The CMP will face the the rear of engine at 0 deg. I haven't had to do this on my rig yet. I have heard when set this way you may not need to go to the dealer/ some one with a DRB scanner and verify SYNC is in range.
I'm headed to Hanna Flats for the weekend with the family, wish you luck with your project.