Chances are, unless you have a 2005+ vehicle (lots of gadgets), emp probably won't take it out. Congress had a commission report on emp in 2004 that tested 20+vehicles, 1982-2002, and most just needed restarting, a couple needed the battery disconnected to reset the ecm, and one lost a digital dash. Cars are pretty well shielded, or you couldn't' listen to an am radio.
I read that report and also read that we need to understand the limitations of their testing before we can take the results as the final word.
"The U.S. EMP Commission tested a number of cars and trucks. Although this was the most comprehensive set of tests on vehicles that has been done, those tests were very poorly done because the Commission was financially responsible for the vehicles, but did not have the funding to pay for any of the vehicles they tested. The vehicles were borrowed from other government agencies, most vehicles from the Department of Defense; and they had to be returned to those lending agencies in good condition.
Those vehicles were tested up to the level that some sort of upset occurred, then further testing was stopped on that vehicle. In most cases, after the initial upset occurred, the vehicle could be restarted. In most of the remaining cases where the vehicle could not be immediately restarted, a latch-up had occurred in the electronics, and the battery could be momentarily disconnected to "re-boot" the electronics, and the vehicle could then be restarted. This temporary electronic latch-up failure mode caused by EMP is something that almost never occurs in automobiles during a typical lifetime of operation.
Only one of the vehicles tested (a pickup) could not be restarted after some minor work, and it had to be towed to the shop for repairs.
Very few of the vehicles were tested up to the maximum level of the EMP simulator. There was considerable disagreement among Commission staff members about how to report on the testing that had been done. Some EMP Commission staff members believe that the wording of the paragraphs in the EMP Commission's Critical National Infrastructures Report about the effect of EMP on vehicles is quite misleading."
http://www.futurescience.com/emp/vehicles.html
I'll add that the Congressional tests were based on theoretical levels from high altitude nuclear bursts (400 km) but not 40 km heights where the EMP pulses are significantly stronger. Either way, the video I posted makes that all moot because of what Boeing has demonstrated with a non-nuclear EMP source.