I don't know much about the Yakima mounting system but it seems like if you don't require the quick removal of the RTT, I would just bolt it to the RhinoRack using the standard Frontrunner brackets and the RhinoRack crossbars.
I lucked into a set of the Frontrunner Quick release brackets at a bargain from a good friend, so I'm going to purchase a second set of RhinoRack accessory bars so that I don't have to drill any holes and it allows me the option down the road for a different RTT. The Frontrunner mounts use M8 bolts and I purchased some M6 slot nuts that I am going to drill out to use with the Frontrunner M8 bolts as spacers. M8 slot nuts are too thick to fit in the channel on the RhinoRack crossbars. It sounds more complicated then it is, I can try to take some pictures to illustrate what I am talking about but I may not be able to get to it before the weekend.