I was just looking for some info and found this forum and thought I'd chime in. I have a 2004 F350/6.0l with a custom flatbed adventure rig (see 'workingonexploring' on YT and workingonexploring.com for details). I've been running dual alts with one (135A large case 6G) dedicated to 12V operation of the vehicle and the other (220A DG Electric, 3G with external Traspo regulator) converted to 24V with an OEM second alternator mounting system, dedicated to charging my 17kwh Nissan Leaf 7S20P battery. I did this about 4 years ago before there were many B-B chargers out plus I wanted a lot more current than most B-B provide (plus then no one made a 24V B-B). I have some e-zine articles on 'truckcampermagazine' and 'truckcamperadventure' if you look for them. While B-B manages most of the demand well, its not the way I went and some of what I did may be helpful whichever way you decide to go;
1) Temperature control of the alternator is something few manufacturers concern themselves with but IMHO is a paramount concern any time you demand lots of power. Alternators have no form of thermal protection and an overload or high underhood temperature can contribute a burnout especially when charging lithium. As a safety measure, I use a thermostat, with the control and display mounted on my center console, that can automatically cut excitation to the external regulator (safely terminating charging). Because my second alternator is not connected to the truck electrical supply in any way, this does not affect truck operation. I believe this is also readily implemented to interrupt the 'ignition' lead of a B-B if the alternator over temps. You could also connect the interrupt in series so that if either alternator was over-temped, it would cut off B-B. My current thermostat (<$10) uses a 10k NTC thermistor, limits at 120C (extremely conservative) and I am soon replacing it with an industrial thermal controller (~$30) with type K thermocouple which will allow higher temps (plan to use 150C) cutoff.
2) I have a console-mounted switch in line with the regulator to shut off charging any time I don't want it such as if I expect to get enough solar, if I am driving a lot of hills, or if I am driving low speed (airflow cooling ls low). Again, a disable switch to the B-B on the 'ignition' line could do the same thing.
3) FYI; Alternators are rated at what they can produce at 6000 alternator RPM. That is nowhere near their continuous duty capacity. Continuous duty capacity is ~1/2 max rated and is much a factor of underhood temperatures which are a function of outside air temperatures, engine load and vehicle speed (airflow). Because of the large potential to overdraw the alternator capacity, I have amp, volt and temp displays on my console as well as an adjustment potentiometer wired into the regulator, to adjust the alternator voltage setpoint at any time (which directly alters amperage output). I can trim my charging to any output I want to suit my conditions and needs. If running several B-B in parallel, I could imagine having an 'enable' switch for each so the load could similarly be adjusted albeit in large steps.
4) Do not put overload protection on your alternator cable that can be triggered by possible alternator output. Short circuit protection within 7" of the battery (ABYC requirement) to any charger is expected but should be sized at 125% of the maximum circuit load/amperage. Also understand that OLPD typically functions at 130% of rating. If you have a 200A alternator, use a 250A device. A 250A device will function at (250A x 130%) 325A which will certainly happen if there is a short circuit but is otherwise impossible. IF the OLPD functions due to overload (even once), and not by a short circuit, it WILL destroy your alternator. If attaching a B-B, put protection between the B-B and battery only.
5) DO not locate any equipment (including fuses or breakers) in the engine compartment. Heat adversely affects their proper operation.
6) Be sure to understand the ampacity of your chosen cable 'in engine spaces' (use ABYC charts). DO NOT ASSUME to use NEC (residential/commercial) ratings. Do not use a cable with insulation rated 60C or below in engine spaces. Automotive manufactures use GXL (cross-linked thermoplastic) which is 75C rated. Many 'battery cables' or primary wires commonly found in automotive stores, are thermoplastic insulation (GPT) which is 60C rated and not suitable. Welding cable (105C rated) is best.
7) If you have a 2015 or later truck, you should also develop an understanding of the operation of your 'smart alternator' and how it works which will significantly affect your decisions.
8) The boat world has been dealing with this problem for quite a while and has some solutions but you need to understand how they will work on your truck, esp if you have a smart alternator. (Balmar, Mastervolt and Wakespeed to name a few).
I am a retired mechanical engineer with experience in high-tech manufacturing including conenctors, wireless power and RVs. I have a pretty in-depth understanding of this topic and would be happy to help anyone in need.