I had a shop do the alignment and they didn't put any on for some reason...it kinda made me a little upset, for this reason. I always use anti-seize on everything that is going to eventually come back apart, and doesn't require loc-tite.
The shock boots is an interesting thought also...I plan to anti-seize the interal section HEAVILY, and then paint the threads on the exposed control arm to hopefully prevent too much rust.
Replaced the oil pressure sending unit in my 2014 JKU. Boy, they really tucked it down in there!!