Unfortunately I don't think I have the time to do a full step by step guide for the uninitiated. Unless you already have some experience with micro-controllers and building your own circuit boards it would be quite a challenging project.
That being said if there are any boffins out the there that want to use this as a starting point, I would be happy to PM you the schematics (once I draw them after the fact) and the firmware code.
On another note I did some testing by cycling my battery from fully charged to 50% charged, and the system seems to be accurate to about 10%! Now I just need to build/buy an on board float charger to keep the aux battery charged as I am driving the Tacoma a lot less often.
If your schematics are hand drawn I would be willing to create an OrCad schematic if you want. PM me if you are interested.
Stewie