My Cherokee is a 1997 with 170,000 miles and I have had/am having unibody issues. It has been on 33's and wheeled regularly since June of 2001...
The first problem is also the most common- the "frame rail" below the steering box develops a crack and the laminated lower sheetmetal layers start to buckle and seperate.
This
seems to be caused by the installation of an aftermarket front bumper for mounting a winch. The Cherokee body in stock form does allow some twisting, the trouble starts when you bolt a highly rigid, heavy front bumper to it. The body still twists, the bumper doesn't. Something has to give. Bolt-on steering box braces excaberate the situation. Use the reinforcing plates that weld or bolt on to the sides of the uniframe.
The next major failure was the leaf spring shackle body mounts.
Fixed like this:
I have been developing cracks where the roof meets the pillars for a while, as well as cracks at the corners of the vents in the door sills. On my last trip I noticed the passanger door no longer contacts the body when closed. On closer inspection, the roof forward of the factory roof rack rails has a downward bow and the floor pan is starting to seperate from the frame rails. Yes, my beloved Cherokee is starting to resemble an old swaybacked horse. I have some T&T frame stiffeners ready to install as a band-aid, unfortunately my fabricator has moved on from his last position.
Keep in mind that my Jeep has lead an unusually tough life. It weighs at least 5000lbs when I leave on a trip and gets wheeled hard. I also put many miles on bad dirt roads, usually at higher speeds than is wise. If I were to start over I would do frame reinforcements first. Here is a good example:
http://www.naxja.org/forum/showthread.php?t=913774
I am probably going to keep on patching my current Cherokee. It is a 2 door, 5-speed, which are very hard to find in the 97-up body style. If a clean one were to appear for sale, that would be another story. This one took 4 months to find so I am not holding my breath.