Wow that is one super clean truck!! Almost looks brand new! Good find on this one. You say on the website interior is like a combo of 70-series and 80-series. Looks more like 70-series and 60-series top me. Those outside mirrors look exactly like FJ62's. The truck to me looks like a 70-series, 60-series combo with a mini 80-series chassis and a Hilux engine!
A buddy of mine in Panama has/had the exact same truck. He hated it because it was full of rust and failing apart. It was in very poor condition all over, body shot, most doors didn't even open anymore, interior trashed and many electrical not working and it leaked oil from every single place it could leak oil from! I had seen these trucks before traveling but had not really been around them much and didn't know much about them. We (my buddy & I) stood around it picking the brain of Tapage (David aka Panama 4x4 club founder) and he explained to us this truck is not very ideal because of it's light duty and heavier weight then say a Hilux. He also explained they are know for some problems which it appears you have already done your homework on.
Now having said all that....I think you have a very nice truck in this one. There is definitely a number of things you can do to it to make it better for off-roading & overlanding. I do believe that is an 8" front axle in it correct? If so, as somebody mentioned you could fit an e-locker or a large variety of other Toyota 8" front axle mods. I can't tell from the pics but it appears to be a high pinion 8". Is it the same width as an 80-series front axle? The auto hubs, it looks like you plan to dump them for manuals. Good plan. Did you know the 80-series can be converted to manual Asian 9.5" axle hubs? All that has to be done is a groove machined into the outer axle stub shaft. I would think it would be the same for this truck.
I think the 1050lb payload is a very generous on Toyota's part. Load 1000lbs+ into this truck and it is going to suffer. I think the frame is up for the task as well as the 5spd and t-case. Isn't the R150F the same as the 5spd put in the HZJ80's? If it was me, I would buff up the frame with some plating here and there simply because I bet you will be close to 6,000lbs if you deck this thing out for overlanding. A heavy duty clutch would also be in order, look at the Excedy Safari Tuff. I would also look into 80-series axle mods, such as fitting a FF rear axle. If the front axle is the same as an 80-series (ie HP 8") I would look into upgrading the steering and knuckles. I think the tie rod behind the axle as well as the knuckles is your weak link in the front. The knuckle design is simply not as strong as some other models, lock it and load down the truck and it will be an even weaker link. The HP though is stronger then your standard low pinion 8" front, especially the 3rd member. However, if it is the same axle as the 80-series you have options to upgrade it. Going to a crossover steering set up will also greatly strengthen it compared to the tie rod behind the axle. It also removes the tie rod from behind the axle allowing for much more clearance and taking full advantage of the high pinion. Here is a link to a knuckle upgrade available for the 80-series 8" which also converts it to crossover steering.
http://hellfirefabworks.com/fj80hsu/
Slee also makes a kit...
http://sleeoffroad.com/products/products_steering_main.htm
I have nothing against Slee or that kit, I think Slee makes some awesome products but I got to say the Hellfire kit is much better and gives you a lot more bang for your buck.
I know you are not big on mods, especially to the engine but I would really look long and hard at an intercooler. You could do either top mount with a scoop or a bigger front mount. You will gain some benefit power wise from either but the main benefit is lower EGTs which in turn means longer engine life. I would also look at doing an external oil cooler. This will also really help prolong engine life. If you are going to up boost, IMHO these two mods are a must. You can also up injector pop pressure to gain some benefits and of course if you up boost up fuel. A free flowing exhaust is best, don't use headers they are a waste on a diesel. Best exhaust would be a straight pipe believe it or not but a nice free flowing muffler is good too. 2.5" pipe seems about right. I realize the want to keep it fairly stock but in this day and age there are proven mods like I mention that will do nothing to shorten engine life or reliability, in fact they will improve it if done right.
Any ways, if it was me I would look into how much of the axles are the same as an 80-series, same for the suspension. If coils, links, panhards, ect are the same as 80-series I would use Slee stuff. I would also upgrade the rear axle to a FF, if you plan to use it for overland trips anyways. I can't imagine swapping in a rear FF 80-series will be all that hard, it is just going to come down to width of the axle. If you didn't go with a FF rear perhaps just some Polyperformance chromoly rear shafts? It is all going to come down to if the axle is the same as a 60 or 80-series. If they are, it is a snap to upgrade, if not it will be much harder and parts will have to likely be sourced from Australia. That is unless you just swapped in some 80-series axles!
I would finish off the axles with some Longfields and the Hellfire knuckles plus crossover steering conversion. These may all sound like mods for off-roading and they are but they are also mods to give much increased strength. Which I feel in turn is super important on a heavily loaded overland truck that will be doing long trips be it on road or off. It looks like you are doing some mods to make things stronger, more reliable as well as better for overlanding & off-roading so why not go all the way!?
That is my 2 cents and yup I am blah'ing on. Yet, the things I mention gives you something to chew on and perhaps think about or look into. Here is a link to a very good Aussie forum where I am sure you can find tons of info on the truck.
http://www.outerlimits4x4.com/