Already outlined it for you dude.
The lines running up to the rad from the transmission have tranny fluid in them. Your new cooler will have tranny fluid in it too. Ideally, if you can figure out with one is send, and which is return, tap off the send line, simply cut it flush like a brake line and ut a slight flare in either end, run your rubber hose from the ends of those cut lines to your new cooler and secure them out of the way. Make sure you top up your transmission after installing because you'll have added a quart or two to the capacity, plus the bit you lost when cutting the line. B&M, or Transdapt or whoever you get the cooler kit from should have instructions telling you something similar. You could eliminate the stock cooler and just fit your rubber hose over the ends of those lines and replace it with a larger air-to-liquid cooler, but I prefer to keep the stock one in play as well. If you can find a spot where the line runs east-west in the vehicle, near the front, you should be able to make your cut/splice without any crazy bends in your rubber lines. Use fuel injection clamps, and make sure you have about an inch of line, onto the metal line, with about half an inch after the clamp, so it doesn't slip off. It's not under extreme pressure, but there is a moderate amount, and transmission fluid is very slippery.
These kinds of coolers are very easy to install, about an hour or so, and with the reputation of Chrysler group transmissions, this'd be the first thing I would install on any jeep. Good luck, and have fun.