Hey Geron, I joined to post on your build thread here. Wow what a crazy amount of stuff you have going on in there! That whole electrical setup is pretty ************ and it sounds like it would be an awesome truck to take out into the desert for a couple weeks on a long safari or something (assuming you could refuel). Where did you put the second alternator?
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My background is really in racing these trucks and performance stuff, not really offroad. But I can tell you broken CV joints happen because of the angles; if you keep them flat they will be just fine. I have launched my truck (99 Silverado z71) on the strip with 4 slicks and the factory 250k mile cv on one side and the oriellys brand replacement on the other have been just fine at 1000rwhp+, also on the stock transfer case. Truck eventually ran 6.05 at 118mph at 5000lbs in the 1/8th before I broke the factory transmission input shaft. The G80 is actually a good design, its just a little small for a fullsize truck. Its biggest issue is trying to lock up at high differential speed under high load, the classic example being trying to kick out the rear end around a corner on the street. Offroad they actually do pretty good.
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For 4wd guys, the 4l80e is 1 11/16" longer, so your rear driveshaft would have to be shortened that amount (if you can find a suitable replacement) and the front lengthened that amount, although the stock front will still have about half engagement if you don't extend it. The mounting points for the crossmember need to be moved rearward 2.5" I believe from the 60e spot. Most guys either weld on another piece to the existing bracket, or there is a guy on makes a tubular replacement at a reasonable cost (same guy that makes the balancer install tool for scoggin dickey). The electronic part can be done through the computer (or using a relay), and all you have to do with the harness is swap a couple pins. You will need to add 2 wires for the front input speed sensor on the trans, but that's just running 2 wires to the pcm. You will need a 32 spline input shaft for the tcase (I got mine from tbtrans I think), and installing it requires taking about the tcase (not hard). If you have an AWD tcase you are out of luck unless you have one made, or there is still a guy making them. The transmission cooler lines might also have to be extended. You will also need a torque converter made to fit the 60e flexplate, or you can use an 80e converter but have to have an 80e flexplate. The 4l80e is a very strong transmission, even in stock form with just a shift kit they will live a long happy life with a stock or semi stock motor in front of them.
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I am also the guy that makes the coilover brackets. I have sold roughly 80 sets over the last few years and never had a single failure or issue with the parts, so I am very confident in the strength and durability of my parts. There are several options on doing the swap, and you can basically go from a ~5" drop to a 4" lift on factory LCA/UCA/Spindle hardware. I have a couple guys with lift kits in the 7-9" range without issue. Your CV and steering angles depend on your height, not how you lift the front, so this wont help you there. What it does give you is a much much better ride than the torsion bars can offer, and a much more robust and adjustable setup. You can set the ride up to be very soft and gentle or very stiff and aggressive depending on your goals and the type of driving you do by selecting the proper spring and shock (which I am happy to help with before you buy anything). Im not trying to come over here to just advertise or anything, but if this is a swap guys would be interested in doing I would be glad to help any way I can! I cant post links here (kinda odd?), but other forums where guys have done the swap include: Performancetrucks dot net (my main forum), gmfullsize dot com, tahoeyukonforum dot com, and silveradoss dot com. I go by Atomic on all of those forums. Feel free to message me or email me at rkwayne at gmail dot com with any questions!