So where do you measure from? You can't just move from hole to hole, that multiplies error. So you have to come back to a common reference point for every single hole/cut/bend.
The big issue for reproducoing a frame is the datum that you use. Also, it's a really long frame, with flex and rotation - and finally if you decide to dip it (galvanize it) everything is going to move slightly wrt that reference point.
Once you get the body off, it should look a lot easier than you think. The frame will be riveted up into the S-section. Use the back edge of the S-section as the reference point. Mark a line there on the old rail.....measure everything foreward and aft from that line.
Drill out all the rivets holding the old frame into the S-section and remove. Use sharp 3/16" and 1/2" drill bits and keep them sharp. First hit the pointed head of each rivet with a lump hammer to give a little flat, then centre punch to give yourself a starting point to drill on.....grab the best drill you have and go for it. Hours of enjoyment. Haha. Get your new rails rolled to fit neatly into the S-section. That's important. Replicate the angle of the cut at the leading edge of the rail that goes up in the S-section. Remember when you are cutting the angle that there is a left and a righthand side!!! . Measure and transfer that marked line to your new rail with the angle already cut. Fit the new rail up into the S-section using the marked line to locate it. Clamp the new rail in place and mark all your holes. Either drill them in place or remove the rail and use a drill press....not sure what gear you have but don't over think it. All measurements aft will still come off the same reference point.
Marking your suspension points ....... You only need to measure a vertical line through the front bolt holes of each bracket and measure down from the top of the rail for the first hole. Be as accurate as possible because this determines the axle location and alignment....however still get a proper front and rear wheel alignment when the job is all finished. Just use an adjustable square sitting on the rail to measure with. Bolt the suspension bracket with one bolt. Square it up and ....then drill through the bracket to get the holes accurate or mark the holes that way and drill on the press. Either way, they will be accurate. I guess you'll get new crossmembers made while you are at it. Same process for locating and drilling them.
Replace every rivet with 12mm high tensile bolts with nyloc nuts and a washer on both sides..... Or Huck rivets are nice if you can hire or borrow a gun.
This is the same process used when you stretch a Canter or move suspension points.
Safety: Be careful drilling ...some of it will be upside down so cover up. I wear welding gear and extra eye protection when I used to do this. The shwarf will be HOT . Also the front of the truck needs to be secure. Set it up on proper chassis stands at the front and bolt RHS or channel to the S-section and down to the ground as legs at the back. Chock both front wheels at the front and back. Clamp off your rear brake line up at the front too so you don't have fluid dripping everywhere before you disconnect the lines....it will be obvious where to do that.....and don't forget to bleed them again at the end of the job.
Disclaimer: In Australia, this work would need to be signed off by authorised engineer. Check out the legalities of you doing this work yourself beforehand and keep it legal.
Regards john.